Files in alextkalinka/delboy

Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests

LICENSE.md R/all_combinations_treat_samples.R R/assemble_elnet_hits.R R/batch_correct.R R/calc_perf_pval_windows.R R/calculate_bayes_factors_2dkcde.R R/calculate_perf_stats.R R/combine_validation_original_hits.R R/data.R R/estimate_nonnull_logfc_distr.R R/estimate_number_non_nulls.R R/evaluate_performance_deg_calls.R R/exclude_predicted_FP_perf.R R/extract_grid_decision_boundary.R R/get_deseq2_results.R R/get_performance_stats.R R/hits.R R/make_coef_matrix.R R/make_delboy_hit_comparison_table.R R/make_design_matrix.R R/make_treat_factor.R R/perf_stats_deg.R R/plot.delboy.R R/predict_FP_delboy.R R/prep_bthin_matrix_diffrep.R R/prep_count_matrix.R R/prep_elnet_data.R R/print.delboy.R R/process_decision_boundary.R R/run_delboy.R R/run_deseq2.R R/run_elnet_logistic_reg.R R/smooth_decision_boundary.R R/svm_false_positive_classification.R README.md man/E2H.Rd man/Tday35.Rd man/WZb.Rd man/WZbNS.Rd man/all_combinations_treat_samples.Rd man/assemble_elnet_hits.Rd man/batch_correct.Rd man/calc_perf_pval_windows.Rd man/calculate_bayes_factors_2dkcde.Rd man/calculate_perf_stats.Rd man/combine_validation_original_hits.Rd man/estimate_nonnull_logfc_distr.Rd man/estimate_number_non_nulls.Rd man/evaluate_performance_deg_calls.Rd man/exclude_predicted_FP_perf.Rd man/extract_grid_decision_boundary.Rd man/get_deseq2_results.Rd man/get_performance_stats.Rd man/hits.Rd man/make_coef_matrix.Rd man/make_delboy_hit_comparison_table.Rd man/make_design_matrix.Rd man/make_treat_factor.Rd man/perf_stats_deg.Rd man/plot.delboy.Rd man/predict_FP_delboy.Rd man/prep_bthin_matrix_diffrep.Rd man/prep_count_matrix.Rd man/prep_elnet_data.Rd man/print.delboy.Rd man/process_decision_boundary.Rd man/run_delboy.Rd man/run_deseq2.Rd man/run_elnet_logistic_reg.Rd man/smooth_decision_boundary.Rd man/svm_false_positive_classification.Rd