R/data.R

In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests

#' Tday35
#'
#' A sample of signal-corrected expression data from a bulk RNA organoid experiment with signal added to a known set of genes.
#'
#' @name Tday35
#' @details A list with the following elements:
#' * `data_bcorr`: A data frame of batch-corrected counts.
#' * `data_val_bcorr`: A data frame of signal-corrected counts.
#' * `lfc_samp`: A named vector of log-fold changes added to `data_bcorr` in which the names are gene names.
#' * `group_1`: The samples that belong to group 1.
#' * `group_2`: The samples that belong to group 2.
#' @md
#' @docType data
#' @keywords data
#' @references Kelava et al. 2021. Male sex hormones increase production of excitatory neurons in human cerebral organoids. bioRxiv. [10.1101/2020.10.24.353359](https://doi.org/10.1101/2020.10.24.353359)
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#' E2H
#'
#' A sample of signal-corrected expression data from a bulk RNA experiment with signal added to a known set of genes.
#'
#' @name E2H
#' @details A list with the following elements:
#' * `data_bcorr`: A data frame of batch-corrected counts.
#' * `data_val_bcorr`: A data frame of signal-corrected counts.
#' * `lfc_samp`: A named vector of log-fold changes added to `data_bcorr` in which the names are gene names.
#' * `group_1`: The samples that belong to group 1.
#' * `group_2`: The samples that belong to group 2.
#' @md
#' @docType data
#' @keywords data
NULL


#' WZb
#'
#' A sample of signal-corrected expression data from a bulk RNA experiment with signal added to a known set of genes.
#'
#' @name WZb
#' @details A list with the following elements:
#' * `data_bcorr`: A data frame of batch-corrected counts.
#' * `data_val_bcorr`: A data frame of signal-corrected counts.
#' * `lfc_samp`: A named vector of log-fold changes with genes as names.
#' * `group_1`: The samples that belong to group 1.
#' * `group_2`: The samples that belong to group 2.
#' @md
#' @docType data
#' @keywords data
NULL


#' WZbNS
#'
#' A sample of signal-corrected expression data from a bulk RNA experiment with no added signal.
#'
#' @name WZbNS
#' @details A list with the following elements:
#' * `data_bcorr`: A data frame of batch-corrected counts.
#' * `group_1`: The samples that belong to group 1.
#' * `group_2`: The samples that belong to group 2.
#' @md
#' @docType data
#' @keywords data
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