get_fastq_id1s: Get first sequence identifiers for fastq.gz files

In alexvpickering/rkal: Run, Import, and Export 'kallisto' Quantifications

Get first sequence identifiers for fastq.gz files

Description

Function is used to determine if an experiment is single or paired.

Usage

get_fastq_id1s(fastq_paths)

Arguments

fastq_paths

Character vector of paths to fastq.gz files

Value

Named character vector of first sequence id lines (start with @) in fastq_paths. Names are the fastq_paths.

Examples

fastq_paths <- system.file("testdata", "SRR12960930.400.fastq.gz",
    package = "rkal"
)
fastq_id1s <- get_fastq_id1s(fastq_paths)

alexvpickering/rkal documentation built on Nov. 27, 2022, 8:38 p.m.