get_kallisto_index: Get path to kallisto index

In alexvpickering/rkal: Run, Import, and Export 'kallisto' Quantifications

Get path to kallisto index

Description

Get path to kallisto index

Usage

get_kallisto_index(indices_dir, species = "homo_sapiens", release = "94")

Arguments

indices_dir	Path to folder with indices dir
species	Character vector giving species
release	Character vector of EnsDB release number. Release '94' is the default because HGNC symbols most closely overlap with those used to annotate CMAP02 and L1000.

Value

Path to kallisto index

Examples

# replace with indices_dir used in build_kallisto_index
indices_dir <- tempdir()

get_kallisto_index(indices_dir)

alexvpickering/rkal documentation built on Nov. 27, 2022, 8:38 p.m.