parse_orthofinder: Parse orthogroups identified by OrthoFinder
In almeidasilvaf/BioNERO: Biological Network Reconstruction Omnibus
View source: R/network_comparison.R
parse_orthofinder R Documentation
Parse orthogroups identified by OrthoFinder
Description
This function converts the orthogroups file named Orthogroups.tsv to
a 3-column data frame that can be interpreted by BioNERO.
Usage
parse_orthofinder(file_path = NULL)
Arguments
file_path
Path to Orthogroups/Orthogroups.tsv file generated
by OrthoFinder.
Value
A 3-column data frame with orthogroups, species IDs and
gene IDs, respectively.
Author(s)
Fabricio Almeida-Silva
Examples
path <- system.file("extdata", "Orthogroups.tsv", package = "BioNERO")
og <- parse_orthofinder(path)
almeidasilvaf/BioNERO documentation built on March 25, 2024, 9:14 p.m.
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View source: R/network_comparison.R
| parse_orthofinder | R Documentation |
Parse orthogroups identified by OrthoFinder
Description
This function converts the orthogroups file named Orthogroups.tsv to a 3-column data frame that can be interpreted by BioNERO.
Usage
parse_orthofinder(file_path = NULL)
Arguments
file_path |
Path to Orthogroups/Orthogroups.tsv file generated by OrthoFinder. |
Value
A 3-column data frame with orthogroups, species IDs and gene IDs, respectively.
Author(s)
Fabricio Almeida-Silva
Examples
path <- system.file("extdata", "Orthogroups.tsv", package = "BioNERO")
og <- parse_orthofinder(path)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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