plot_gene_significance: Plot a heatmap of gene significance

In almeidasilvaf/BioNERO: Biological Network Reconstruction Omnibus

Plot a heatmap of gene significance

Description

Plot a heatmap of gene significance

Usage

plot_gene_significance(corandp, palette = "RdYlBu", transpose = FALSE, ...)

Arguments

corandp	A data frame of gene-trait correlations as returned by gene_significance().
palette	Character indicating which RColorBrewer palette to use. Default: 'RdYlBu'.
transpose	Logical indicating whether to transpose the heatmap or not.
...	Additional arguments to ComplexHeatmap::pheatmap().

Details

Significance levels: 1 asterisk: significant at alpha = 0.05. 2 asterisks: significant at alpha = 0.01. 3 asterisks: significant at alpha = 0.001. no asterisk: not significant.

Value

A 'Heatmap' object created by ComplexHeatmap::pheatmap().

Examples

data(filt.se)
gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
corandp <- gene_significance(filt.se)
plot_gene_significance(corandp, show_rownames = FALSE)

almeidasilvaf/BioNERO documentation built on Oct. 9, 2024, 1:49 a.m.