API for almeidasilvaf/cogeqc
Systematic quality checks on comparative genomics analyses
| Global functions | |
|---|---|
| abbreviate_names | Source code |
| add_label_busco | Source code |
| assess_orthogroups | Man page Source code |
| assess_synnet | Man page Source code |
| assess_synnet_list | Man page Source code |
| batch_summary | Man page |
| busco_is_installed | Man page Source code |
| calculate_H | Man page Source code |
| cogeqc | Man page |
| cogeqc-package | Man page |
| compare_genome_stats | Man page Source code |
| compare_orthogroups | Man page Source code |
| extract_columns | Source code |
| fit_sft | Man page Source code |
| get_genome_stats | Man page Source code |
| handle_busco_input | Source code |
| interpro_ath | Man page |
| interpro_bol | Man page |
| is_valid | Source code |
| list_busco_datasets | Man page Source code |
| og | Man page |
| overclustering_correction | Source code |
| plot_busco | Man page Source code |
| plot_duplications | Man page Source code |
| plot_genes_in_ogs | Man page Source code |
| plot_genome_stats | Man page Source code |
| plot_og_overlap | Man page Source code |
| plot_og_sizes | Man page Source code |
| plot_orthofinder_stats | Man page Source code |
| plot_species_specific_ogs | Man page Source code |
| plot_species_tree | Man page Source code |
| read_busco | Man page Source code |
| read_orthofinder_stats | Man page Source code |
| read_orthogroups | Man page Source code |
| run_busco | Man page Source code |
| synnet | Man page |
| tree | Man page |
