Man pages for ambu-vijayan/baseq
Basic Sequence Processing Tool for Biological Data
| clean_DNA_file | Clean DNA file |
| clean_DNA_sequence | Clean DNA sequence |
| clean_RNA_file | Clean RNA file |
| clean_RNA_sequence | Clean RNA sequence |
| clean_sequence | Clean DNA or RNA sequence |
| count_bases | Count the number of A's, C's, G's, and T's in a DNA sequence |
| count_seq_pattern | Count frequency of a pattern in a sequence |
| dna_to_protein | Translation of a DNA sequence |
| dna_to_rna | Transcription of a DNA sequence |
| fastq_to_fasta | Convert a FASTQ file to a FASTA file |
| gc_content | Calculate GC content of a DNA sequence |
| gc_content_file | GC content of sequences in a multi FASTA file |
| read.fasta_to_df | Read a fasta file into a dataframe and assign to the... |
| read.fasta_to_list | Read a fasta file into a list and assign to the environment |
| read.fastq_to_df | Read a Fastq file and store it as a dataframe |
| read.fastq_to_list | Read a Fastq file and store it as a list |
| reverse_complement | Generate Reverse Complement of DNA sequence |
| rna_reverse_complement | Generate Reverse Complement of DNA sequence |
| rna_to_dna | Reverse Transcription of a RNA sequence |
| rna_to_protein | Translation of a RNA sequence |
| write.df_to_fasta | Write a data frame to a fasta file |
| write.df_to_fastq | Write a FASTQ file from a dataframe of reads |
| write.list_to_fasta | Write a list of sequences to a FASTA file |
| write.list_to_fastq | Write a list of sequences and quality scores to a FASTQ file |
