count_seq_pattern: Count frequency of a pattern in a sequence

In ambu-vijayan/baseq: Basic Sequence Processing Tool for Biological Data

Count frequency of a pattern in a sequence

Description

This function counts the frequency of a specific character or pattern in a given sequence.

Usage

count_seq_pattern(seq, pattern)

Arguments

seq	A character vector representing the sequence to count the pattern in.
pattern	A character string representing the pattern to count in the sequence.

Value

An integer representing the count of the pattern in the sequence.

Examples

seq <- "ATGGTGCTCCGTGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCTACGTAG"
count_seq_pattern(seq, "CG")
# [1] 31

ambu-vijayan/baseq documentation built on May 6, 2023, 10:31 p.m.