clean_DNA_file: Clean DNA file
In ambu-vijayan/baseq: Basic Sequence Processing Tool for Biological Data
clean_DNA_file R Documentation
Clean DNA file
Description
This function reads a multi FASTA file containing DNA sequences, removes any characters other
than A, T, G, and C, and writes the cleaned sequences to a new multi FASTA file. The output
file name is generated from the input file name with the suffix '_clean.fasta'.
Usage
clean_DNA_file(input_file)
Arguments
input_file
The name of the input multi FASTA file.
Value
A character string specifying the path to the output FASTA file.
Examples
sample_file_path_three <- system.file("extdata", "sample2_fa.fasta", package = "baseq")
clean_DNA_file(sample_file_path_three)
ambu-vijayan/baseq documentation built on May 6, 2023, 10:31 p.m.
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| clean_DNA_file | R Documentation |
Clean DNA file
Description
This function reads a multi FASTA file containing DNA sequences, removes any characters other than A, T, G, and C, and writes the cleaned sequences to a new multi FASTA file. The output file name is generated from the input file name with the suffix '_clean.fasta'.
Usage
clean_DNA_file(input_file)
Arguments
input_file |
The name of the input multi FASTA file. |
Value
A character string specifying the path to the output FASTA file.
Examples
sample_file_path_three <- system.file("extdata", "sample2_fa.fasta", package = "baseq")
clean_DNA_file(sample_file_path_three)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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