read.fastq_to_list: Read a Fastq file and store it as a list
In ambu-vijayan/baseq: Basic Sequence Processing Tool for Biological Data
View source: R/read_fastq_list.R
read.fastq_to_list R Documentation
Read a Fastq file and store it as a list
Description
This function reads a Fastq file and stores it as a list with three columns: Header, Sequence, and QualityScore.
Usage
read.fastq_to_list(fastq_file)
Arguments
fastq_file
A character string specifying the path to the Fastq file to be read.
Value
This function returns a list with three columns: Header, Sequence, and QualityScore.
Examples
# Read in sequences from a FASTQ file
sample_file_path_two <- system.file("extdata", "sample_fq.fastq", package = "baseq")
read.fastq_to_list(sample_file_path_two)
ambu-vijayan/baseq documentation built on May 6, 2023, 10:31 p.m.
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View source: R/read_fastq_list.R
| read.fastq_to_list | R Documentation |
Read a Fastq file and store it as a list
Description
This function reads a Fastq file and stores it as a list with three columns: Header, Sequence, and QualityScore.
Usage
read.fastq_to_list(fastq_file)
Arguments
fastq_file |
A character string specifying the path to the Fastq file to be read. |
Value
This function returns a list with three columns: Header, Sequence, and QualityScore.
Examples
# Read in sequences from a FASTQ file
sample_file_path_two <- system.file("extdata", "sample_fq.fastq", package = "baseq")
read.fastq_to_list(sample_file_path_two)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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