write.list_to_fastq: Write a list of sequences and quality scores to a FASTQ file

In ambu-vijayan/baseq: Basic Sequence Processing Tool for Biological Data

Write a list of sequences and quality scores to a FASTQ file

Description

This function takes a list of sequences and quality scores and writes them to a FASTQ file. The name of the list is used as the base name for the output file with the .fastq extension. Each sequence in the list is written to the output file in FASTQ format with the sequence name as the header and the quality scores on the following line.

Usage

write.list_to_fastq(sequence_list)

Arguments

sequence_list

A list of sequences where each element of the list is a named list containing "Sequence" and "QualityScore" elements.

Examples

sequences <- list("ACGT", "ATCG")
quality_scores <- list("IIII", "JJJJ")
sequences_list <- list(seq1=list(Sequence=sequences[[1]], QualityScore=quality_scores[[1]]),
                       seq2=list(Sequence=sequences[[2]], QualityScore=quality_scores[[2]]))
write.list_to_fastq(sequences_list)

ambu-vijayan/baseq documentation built on May 6, 2023, 10:31 p.m.