Man pages for ampatzia/pasaR
Pangenome Statistical Analysis for R
| bac_stre | Streptococcus and Bacillus pangenomic data |
| bac_stre_names | Names of Streptococcus and Bacillus species |
| binomixMachine | Binomix machine |
| cluster_number | Cluster Analysis with fluidity |
| cp_plot | Cluster participation plots |
| gp_plot | Gene participation plots |
| grid_plot | grid plot |
| gtools_comb | Helper function: gtools::combination |
| make_panmatrix | Make panmatrix (MCL data) |
| make_panmatrix_fami | Make panmatrix (fami MCL data) |
| make_panmatrix_fami2 | Make panmatrix (fami 2 MCL data) |
| mg_plot | Gene membership |
| negTruncLogLike | Truncated log likelihood |
| organism_names_panmatrix_fami | Organism Names - fami |
| org_names | Organism Names - MCL |
| org_names_fami2 | Organism Names - MCL (fami2) |
| panm_summary | Panmatrix Summary |
| pm_binom | Binomial mixture fitting |
| pm_chao | Chao lower bound estimator |
| pm_cluster | Pangenome agglomerative hierarchical clustering based on... |
| pm_fluidity | Genome Fluidity with sampling |
| pm_fluidity_all | Genome Fluidity |
| pm_heaps | Heap's Law fitting |
| pm_plot | Panmatrix Plots |
