cp_plot: Cluster participation plots
In ampatzia/pasaR: Pangenome Statistical Analysis for R
Description
Usage
Arguments
Examples
Description
This function produces a basic plot of the pangenome.
This can be either a point plot or a bar plot.
Usage
1
cp_plot(Panmatrix, show_cluster, plot_type, use_log)
Arguments
Panmatrix
Panmatrix produced by make_panmatrix functions
show_cluster
Integer value optional parameter allows to user to "zoom",
ignoring clusters that have organism participation below it
plot_type
Can be either line or bar
use_log
Logical:Scale axis containing clusters with log
Examples
1
## Not run: cp_plot(Panmatrix)
ampatzia/pasaR documentation built on May 12, 2019, 2:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
This function produces a basic plot of the pangenome. This can be either a point plot or a bar plot.
Usage
1 | cp_plot(Panmatrix, show_cluster, plot_type, use_log)
|
Arguments
Panmatrix |
Panmatrix produced by make_panmatrix functions |
show_cluster |
Integer value optional parameter allows to user to "zoom", ignoring clusters that have organism participation below it |
plot_type |
Can be either line or bar |
use_log |
Logical:Scale axis containing clusters with log |
Examples
1 | ## Not run: cp_plot(Panmatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.