bac_stre: Streptococcus and Bacillus pangenomic data

In ampatzia/pasaR: Pangenome Statistical Analysis for R

Description

A cluster membership data frame for genes from 81 bacterial genomes (rows) spread in 149721 clusters (columns). The dataset was created from publicly available data from Ensembl,It was produced by a standard clustering pipeline with the default settings (BLAST and MCL). and contains seven (81) strains of the following bacteria : twelve (12) of Streptococcus pneumoniae, thirteen (13) of Streptococcus Pyogenes, thirty nine (39) of Bacillus cereus and seventeen (17) of Bacillus thuringiensis. Genome names are contained in the bac_stre_names dataset.

Usage

data(bac_stre)

Format

An object of class tbl_df (inherits from tbl, data.frame) with 81 rows and 149721 columns.

References

Mpatziakas A, Psomopoulos FE, Moysiadis T and Sgardelis S. Computing pangenome statistics in R F1000Research 2017, 6(ISCB Comm J):1529 (poster) (doi: 10.7490/f1000research.1114765.1)

Examples

data(bac_stre)

ampatzia/pasaR documentation built on May 12, 2019, 2:37 a.m.