gp_plot: Gene participation plots

In ampatzia/pasaR: Pangenome Statistical Analysis for R

Description

This function produces a basic plot of the Gene paticipation per Cluster. This can be either a point plot or a bar plot.

Usage

gp_plot(Panmatrix, show_cluster, plot_type, collapsed = FALSE, use_log)

Arguments

Panmatrix	Panmatrix produced by make_panmatrix functions
show_cluster	Integer value optional parameter allows to user to "zoom", ignoring clusters that have organism participation below it
plot_type	Can be either line or bar
collapsed	Logical, TRUE merges all clusters with more than 3 times the number of genomes examined
use_log	Logical:Scale axis containing clusters with log

Examples

## Not run: gp_plot(Panmatrix)

ampatzia/pasaR documentation built on May 12, 2019, 2:37 a.m.