pm_plot: Panmatrix Plots
In ampatzia/pasaR: Pangenome Statistical Analysis for R
Description
Usage
Arguments
Examples
Description
This function produces a basic plot of the pangenome.
This can be either a line plot or a bar plot.
Usage
1
pm_plot(Panmatrix, show_cluster, plot_type, use_log)
Arguments
Panmatrix
Panmatrix produced by make_panmatrix functions
show_cluster
Integer value optional parameter allows to user to "zoom",
ignoring clusters that have organism participation below it
plot_type
Can be either line or bar
use_log
Logical:Scale axis containing clusters with log
Examples
1
## Not run: pm_plot(Panmatrix)
ampatzia/pasaR documentation built on May 12, 2019, 2:37 a.m.
R Package Documentation
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Description Usage Arguments Examples
Description
This function produces a basic plot of the pangenome. This can be either a line plot or a bar plot.
Usage
1 | pm_plot(Panmatrix, show_cluster, plot_type, use_log)
|
Arguments
Panmatrix |
Panmatrix produced by make_panmatrix functions |
show_cluster |
Integer value optional parameter allows to user to "zoom", ignoring clusters that have organism participation below it |
plot_type |
Can be either line or bar |
use_log |
Logical:Scale axis containing clusters with log |
Examples
1 | ## Not run: pm_plot(Panmatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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