API for ananata/fastq2otu
FASTQ2OTU: Automate microbiome analyses
| Global functions | |
|---|---|
| assignSeqTaxonomy | Man page Source code |
| check_assign_tax | Man page Source code |
| check_fastPaired | Man page Source code |
| check_fastSingle | Man page Source code |
| check_fastq2otu | Man page Source code |
| check_filt_params | Man page Source code |
| check_primer_trim | Man page Source code |
| check_seq_dump | Man page Source code |
| fastAssignTaxa-class | Man page |
| fastFilter-class | Man page |
| fastPaired-class | Man page |
| fastPlotQuality-class | Man page |
| fastPrimerTrim-class | Man page |
| fastReport-class | Man page |
| fastSeqDump-class | Man page |
| fastSingle-class | Man page |
| fastq2otu-class | Man page |
| filtTrim | Man page Source code |
| getMeanQualityProfile | Man page Source code |
| getSeqs | Man page Source code |
| help_paired_analysis | Source code |
| help_single_analysis | Source code |
| mergeSamples | Man page Source code |
| mergeSeqPairs | Source code |
| paired_analysis | Source code |
| plotQuality | Man page Source code |
| plotSeqOverlap | Man page Source code |
| plot_quality | Man page Source code |
| readConfig | Man page Source code |
| removeChimeras | Man page Source code |
| runPipeline | Man page Source code |
| saveSeqs | Man page Source code |
| saveTaxonomyTables | Man page Source code |
| setFastAssignTaxa | Man page Source code |
| setFastFilter | Man page Source code |
| setFastPaired | Man page Source code |
| setFastPrimerTrim | Man page Source code |
| setFastReport | Man page Source code |
| setFastSeqDump | Man page Source code |
| setFastSingle | Man page Source code |
| setfastPlotQuality | Man page Source code |
| single_analysis | Source code |
| trimAdapters | Man page Source code |
