filtTrim: Filter and trim single or paired-end data

In ananata/fastq2otu: FASTQ2OTU: Automate microbiome analyses

Description

Filter and trim single or paired-end data

Usage

filtTrim(object, sample.names, forwardFs = NA, reverseRs = NA)

Arguments

object	S4 object of type class fastq2otu (i.e. fastq2otu_single, fastq2otu_paired)
sample.names	character vector containing sample ids
forwardFs	character vecter containing paths to forward/single reads
reverseRs	character vector containing paths to reverse reads

ananata/fastq2otu documentation built on Feb. 2, 2022, 4:20 p.m.