check_primer_trim: Check for valid inputs for fastPrimerTrim

Description Usage Arguments Value

View source: R/setup.R

Description

This function checks to see if "pathToBBduk", "listOfAdapters", "pathToRawFastq" and "pathToNoPrimers" parameters are present and valid. Missing or invalid inputs will cause an error message to be displayed.

Usage

1

Arguments

object

fastPrimerTrim-type S4 object

Value

TRUE (boolean) or error message detailing source(s) of error.


ananata/fastq2otu documentation built on Feb. 2, 2022, 4:20 p.m.