setFastReport: Create a fastReport object Users have the option of creating...

Description Usage Arguments

View source: R/setup.R

Description

Create a fastReport object Users have the option of creating a detailed report of their data using FASTQC

Usage

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setFastReport(
  inDir,
  outDir,
  validate = FALSE,
  fastqcPath = NA_character_,
  installFastqc = FALSE,
  numThreads = 4,
  description = NA_character_
)

Arguments

inDir

Required input. Path to directory containing FASTQ files.

outDir

Required input. Path to write output files.

validate

Default is FALSE. When TRUE, all validation functions are executed.

adapterList

Required input. List of adapter sequences to remove from files.

TODO: Add Example


ananata/fastq2otu documentation built on Feb. 2, 2022, 4:20 p.m.