assignSeqTaxonomy: Assign Taxonomy Uses DADA2's assignTaxonomy function to...
In ananata/fastq2otu: FASTQ2OTU: Automate microbiome analyses
Description
Usage
Arguments
Value
View source: R/assignSeqTaxonomy.R
Description
Assign Taxonomy
Uses DADA2's assignTaxonomy function to assign taxa to ASV sequences.
Usage
1
assignSeqTaxonomy(seqtab, object)
Arguments
seqtab
Sequence frequency table
object
S4 object of type fastq2otu (i.e. fastPaired, fastSingle)
Value
OTU table
ananata/fastq2otu documentation built on Feb. 2, 2022, 4:20 p.m.
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Description Usage Arguments Value
View source: R/assignSeqTaxonomy.R
Description
Assign Taxonomy Uses DADA2's assignTaxonomy function to assign taxa to ASV sequences.
Usage
1 | assignSeqTaxonomy(seqtab, object)
|
Arguments
seqtab |
Sequence frequency table |
object |
S4 object of type fastq2otu (i.e. fastPaired, fastSingle) |
Value
OTU table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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