setFastFilter: Create a fastFilter object
In ananata/fastq2otu: FASTQ2OTU: Automate microbiome analyses

Create a fastFilter object

setFastFilter(
  inDir,
  outDir,
  prefix = "myproject",
  validate = FALSE,
  maxEE = 2.5,
  truncQ = 0,
  truncLen = 0,
  trimLeft = 0,
  trimRight = 0,
  matchIDs = FALSE,
  minLen = 50,
  isPaired = FALSE,
  verbose = FALSE,
  multithread = FALSE
)

`inDir`	Required input. Path to FASTQ files.
`outDir`	Required input. Path to write output files.
`prefix`	Default is "myproject". Project-specific label that will be included in the names of all files and directories created.
`validate`	Default is FALSE. When TRUE all validation methods are executed.
`maxEE`	Default is 2.5. Sets maxEE parameter for DADA2's filterAndTrim method. Two numeric inputs are expected for paired-end data.
`truncQ`	Default is 0. Sets truncQ parameter for DADA2's filterAndTrim method. Two numeric inputs are expected for paired-end data.
`truncLen`	Default is 0. Sets truncLen parameter for DADA2 filterAndTrim function. Two numeric inputs are expected for paired-end data.
`trimLeft`	Default is 0. Sets trimLeft parameter for DADA2 filterAndTrim function. Two numeric inputs are expected for paired-end data.
`trimRight`	Default is 0. Sets trimRight parameter for DADA2 filterAndTrim function. Two numeric inputs are expected for paired-end data.
`matchIDs`	Default is FALSE. Sets matchIDs parameter for DADA2 filterAndTrim function. Set TRUE when handling paired-end data with complementary file names for forward and reverse reads.
`minLen`	Default is 50. Sets minLen parameter for DADA2 filterAndTrim function. Two numeric inputs are expected for paired-end data.
`isPaired`	Default is FALSE. If TRUE, two values must be provided for truncQ, truncLen, trimLeft and trimRight, and minLen (see example below). TODO: Add Example
`verbose`	Default is FALSE. Sets verbose parameter for DADA2 methods.
`multithread`	Default is FALSE. Sets multithread parameter for DADA2 methods.