getSeqs: Download SRA data using fastq-dump Parses list of SRA...
In ananata/fastq2otu: FASTQ2OTU: Automate microbiome analyses
Description
Usage
Arguments
Value
Description
Download SRA data using fastq-dump
Parses list of SRA accession numbers and uses fastq-dump to download FASTQ files directly from NCBI.
Downloaded files are gziped by default.
Usage
1
Arguments
object
S4 object of type fastq2otu (i.e. fastq2otu_paired or fastq2otu_single)
useFastqDump
Default is FALSE. If TRUE, fastqdump is used to download sequence files.
Value
path to directory
ananata/fastq2otu documentation built on Feb. 2, 2022, 4:20 p.m.
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Description Usage Arguments Value
Description
Download SRA data using fastq-dump Parses list of SRA accession numbers and uses fastq-dump to download FASTQ files directly from NCBI. Downloaded files are gziped by default.
Usage
1 |
Arguments
object |
S4 object of type fastq2otu (i.e. fastq2otu_paired or fastq2otu_single) |
useFastqDump |
Default is FALSE. If TRUE, fastqdump is used to download sequence files. |
Value
path to directory
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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