API for andreaskapou/BPRMeth-devel
Model higher-order methylation profiles
| Global functions | |
|---|---|
| .datatable.aware | Man page |
| BPRMeth | Man page |
| BPRMeth-package | Man page |
| basis | Man page |
| betareg | Man page |
| betareg_cluster_wrap | Man page |
| betareg_gradient | Man page |
| betareg_likelihood | Man page |
| betareg_model | Man page |
| betareg_optim | Man page |
| betareg_optim.list | Man page |
| betareg_optim.matrix | Man page |
| betareg_optimise | Man page |
| betareg_optimize | Man page |
| blr | Man page |
| blr_cluster | Man page |
| boxplot_cluster_gex | Man page |
| bpr | Man page |
| bpr_EM_fast | Man page |
| bpr_bayes | Man page Man page |
| bpr_bayes.list | Man page |
| bpr_bayes.matrix | Man page |
| bpr_bayes_predict_wrap | Man page |
| bpr_cluster_wrap | Man page |
| bpr_diff_classify_wrap | Man page |
| bpr_diff_eval_predict_wrap | Man page |
| bpr_diff_predict_wrap | Man page |
| bpr_diff_test_data_wrap | Man page |
| bpr_diff_test_wrap | Man page |
| bpr_gradient | Man page |
| bpr_lik_region | Man page |
| bpr_lik_resp | Man page |
| bpr_likelihood | Man page |
| bpr_model | Man page |
| bpr_optim | Man page |
| bpr_optim.list | Man page |
| bpr_optim.matrix | Man page |
| bpr_optim_fast | Man page |
| bpr_optimise | Man page |
| bpr_optimize | Man page |
| bpr_predict_wrap | Man page |
| create_basis | Man page |
| create_fourier_object | Man page |
| create_methyl_region | Man page Man page |
| create_methyl_region_array | Man page |
| create_methyl_region_saar_eff | Man page |
| create_methyl_region_saar_levels | Man page |
| create_polynomial_object | Man page |
| create_prom_region | Man page |
| create_rbf_object | Man page |
| des_mat | Man page |
| des_matrix, | Man page |
| design_matrix | Man page Man page |
| design_matrix.default | Man page |
| design_matrix.fourier | Man page |
| design_matrix.polynomial | Man page |
| design_matrix.rbf | Man page |
| designmatrix, | Man page |
| eval_function | Man page |
| eval_function.fourier | Man page |
| eval_function.polynomial | Man page |
| eval_function.rbf | Man page |
| eval_functions | Man page |
| eval_probit_function | Man page |
| gex_data | Man page |
| lm_data | Man page |
| met_region | Man page |
| meth_data | Man page |
| methyl_region, | Man page |
| plot_cluster_prof | Man page |
| plot_fitted_profiles | Man page |
| plot_scatter_gex | Man page |
| pool_bs_seq_rep | Man page |
| predict.blr | Man page |
| predict_classification_model | Man page |
| predict_model_gex | Man page |
| preprocess_bs_seq | Man page |
| preprocess_final_HTS_data | Man page |
| print.blr | Man page |
| print.summary.blr | Man page |
| process_bismark_beatson_wrap | Man page |
| process_haib_caltech_wrap | Man page |
| read_bs_bismark_cov | Man page |
| read_bs_encode_haib | Man page |
| read_bs_sc | Man page |
| read_chrom_size | Man page |
| read_encode_cgi | Man page |
| read_rna_beatson | Man page |
| read_rna_encode_caltech | Man page |
| sc_bayes_bpr_fdmm | Man page |
| sc_bayes_bpr_fdmm_old | Man page |
| sc_bpr_cluster_wrap | Man page |
| sum_weighted_betareg_grad | Man page |
| sum_weighted_betareg_lik | Man page |
| sum_weighted_bpr_grad | Man page |
| sum_weighted_bpr_lik | Man page |
| summary.blr | Man page |
| train_classification_model | Man page |
| train_model_gex | Man page |
