plot_fitted_profiles: Plot the fit of methylation profiles across a region
In andreaskapou/BPRMeth-devel: Model higher-order methylation profiles

Description Usage Arguments Value Author(s) See Also Examples

plot_fitted_profiles is a simple function for plotting the methylation data across a give region, together with the fit of the methylation profiles.

1 2	plot_fitted_profiles(region, X, fit_prof, fit_mean = NULL, title = "Gene promoter", up_label = "-7kb", down_label = "+7kb", ...)

`region`	Promoter region number
`X`	Methylation data observations
`fit_prof`	Fitted profile
`fit_mean`	Fitted mean function
`title`	Title of the plot
`up_label`	Label for upstream region from TSS
`down_label`	Label for downstream region from TSS
`...`	Additional parameters

The figure to be plotted in the device.

C.A.Kapourani C.A.Kapourani@ed.ac.uk

plot_cluster_prof, plot_scatter_gex, boxplot_cluster_gex

# Fit methylation profiles using 8 RBFs
obs <- meth_data
y   <- gex_data
basis <- create_rbf_object(M = 8)
out   <- bpr_predict_wrap(x = obs, y = y, basis = basis,
                          is_parallel = FALSE, opt_itnmax = 10)

# Create the plot
plot_fitted_profiles(region = 16, X = meth_data, fit_prof = out)