read_encode_cgi: Read file containing CpG island locations
In andreaskapou/processHTS: Process HTS Files and Data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
read_encode_cgi reads a file containing CpG island (CGI) locations in
the human genome using the fread function.
Usage
1
read_encode_cgi(file, is_GRanges = TRUE)
Arguments
file
The name of the file to read data values from.
is_GRanges
Logical: if TRUE a GRanges object is returned, otherwise a
data.frame object is returned.
Value
A GRanges object if is_GRanges is
TRUE, otherwise a data.table object.
The GRanges object contains one additional metadata column:
-
cgi_id: Unique ID of the CpG Island.
This column can be accessed
as follows: granges_object$cgi_id
Author(s)
C.A.Kapourani C.A.Kapourani@ed.ac.uk
See Also
read_rna_encode_caltech,
read_bs_encode_haib
andreaskapou/processHTS documentation built on May 12, 2019, 3:33 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
read_encode_cgi reads a file containing CpG island (CGI) locations in
the human genome using the fread function.
Usage
1 | read_encode_cgi(file, is_GRanges = TRUE)
|
Arguments
file |
The name of the file to read data values from. |
is_GRanges |
Logical: if TRUE a GRanges object is returned, otherwise a data.frame object is returned. |
Value
A GRanges object if is_GRanges is
TRUE, otherwise a data.table object.
The GRanges object contains one additional metadata column:
-
cgi_id: Unique ID of the CpG Island.
This column can be accessed
as follows: granges_object$cgi_id
Author(s)
C.A.Kapourani C.A.Kapourani@ed.ac.uk
See Also
read_rna_encode_caltech,
read_bs_encode_haib
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.