Files in andreaskapou/processHTS
Process HTS Files and Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/create_enh_region.R
R/create_methyl_region.R
R/create_prom_region.R
R/data.R
R/intersect_cgi_tss.R
R/plots.R
R/pool_bs_seq_rep.R
R/preprocess_bs_seq.R
R/processHTS.R
R/process_beatson_enh_wrap.R
R/process_beatson_wrap.R
R/process_diff_beatson.R
R/process_diff_haib_caltech.R
R/process_haib_caltech_wrap.R
R/read_annot_beatson.R
R/read_bs_bismark_cov.R
R/read_bs_encode_haib.R
R/read_chrom_size.R
R/read_encode_cgi.R
R/read_enh_beatson.R
R/read_rna_beatson.R
R/read_rna_encode_caltech.R
R/utils.R
README.md
data-raw/create_data.R
data/annot_data.rda
data/bs_data.rda
data/hg19_data.rda
data/rnaseq_data.rda
data/rrbs_data.rda
inst/extdata/annot_beatson.bed
inst/extdata/annot_beatson2.bed
inst/extdata/bism_rep1.bed
inst/extdata/bism_rep2.bed
inst/extdata/enhancers_beatson.bed
inst/extdata/hg19
inst/extdata/rna_beatson.bed
inst/extdata/rna_beatson2.bed
inst/extdata/rnaseq.bed
inst/extdata/rnaseqH1hESC.bed
inst/extdata/rrbs.bed
inst/extdata/rrbsH1hESC.bed
man/annot_data.Rd
man/bs_data.Rd
man/create_enh_region.Rd
man/create_methyl_region.Rd
man/create_prom_region.Rd
man/discard_bs_noise_reads.Rd
man/discard_chr.Rd
man/extract_fpkm.Rd
man/extract_gene_name.Rd
man/hg19_data.Rd
man/intersect_cgi_tss.Rd
man/minmax_scaling.Rd
man/plot_prom_cpg_density.Rd
man/plot_prom_cpg_hist.Rd
man/pool_bs_seq_rep.Rd
man/preprocess_bs_seq.Rd
man/processHTS.Rd
man/process_beatson_enh_wrap.Rd
man/process_beatson_wrap.Rd
man/process_diff_beatson.Rd
man/process_diff_haib_caltech.Rd
man/process_haib_caltech_wrap.Rd
man/read_annot_beatson.Rd
man/read_bs_bismark_cov.Rd
man/read_bs_encode_haib.Rd
man/read_chrom_size.Rd
man/read_encode_cgi.Rd
man/read_enh_beatson.Rd
man/read_rna_beatson.Rd
man/read_rna_encode_caltech.Rd
man/rnaseq_data.Rd
man/rrbs_data.Rd
processHTS.Rproj
tests/testthat.R
tests/testthat/rnaseq.bed
tests/testthat/test-methylation.R
tests/testthat/test-read.R
tools/processFiles.sh
vignettes/processHTS-vignette.Rmd
