R/data.R

In andreaskapou/processHTS: Process HTS Files and Data

#' Human Genome Assembly 19 chromosome sizes.
#'
#' Data containing the human genome assembly 19 (hg19) chromosome sizes.
#'
#' @format A data frame with 1 variable: \code{size}
"hg19_data"


#' RNA-Seq example data
#'
#' Data coming from RNA sequencing experiments.
#'
#' @format A data.frame
"rnaseq_data"

#' Annotation example data
#'
#' Data containing gene annotation.
#'
#' @format A \code{\link[GenomicRanges]{GRanges}} object.
"annot_data"

#' RRBS example data
#'
#' Data coming from Reduced Representation Bisulfite Sequecning experiments.
#'
#' @format A \code{\link[GenomicRanges]{GRanges}} object.
"rrbs_data"


#' Bismark Cov formatted BS-Seq example data
#'
#' Data coming from BS-Seq experiments in Bismark Cov format.
#'
#' @format A \code{\link[GenomicRanges]{GRanges}} object.
"bs_data"