API for annecori/EpiEstim
Estimate Time Varying Reproduction Numbers from Epidemic Curves
| Global functions | |
|---|---|
| DiscrSI | Man page Source code |
| EstimateR | Man page Source code |
| Flu1918 | Man page |
| Flu2009 | Man page |
| Measles1861 | Man page |
| MockRotavirus | Man page |
| OverallInfectivity | Man page Source code |
| SARS2003 | Man page |
| Smallpox1972 | Man page |
| WT | Man page Source code |
| aggregate_inc | Man page Source code |
| check_cdt_samples_convergence | Man page Source code |
| check_config | Source code |
| check_dates | Source code |
| check_si_distr | Source code |
| check_times | Source code |
| coarse2estim | Man page Source code |
| compute_lambda | Man page Source code |
| compute_si_cutoff | Man page Source code |
| compute_t_min | Man page Source code |
| covid_deaths_2020_uk | Man page |
| default_mcmc_controls | Man page Source code |
| default_priors | Man page Source code |
| discr_si | Man page Source code |
| draw_R | Man page Source code |
| draw_epsilon | Man page Source code |
| estimate_R | Man page Source code |
| estimate_R_agg | Man page Source code |
| estimate_R_func | Source code |
| estimate_R_plots | Man page Source code |
| estimate_advantage | Man page Source code |
| first_nonzero_incid | Man page Source code |
| flu_2009_NYC_school | Man page |
| get_shape_R_flat | Man page Source code |
| get_shape_epsilon | Man page Source code |
| init_mcmc_params | Man page Source code |
| make_config | Man page Source code |
| make_mcmc_control | Man page Source code |
| mers_2014_15 | Man page |
| modify_defaults | Source code |
| overall_infectivity | Man page Source code |
| plot.estimate_R | Man page Source code |
| process_I | Source code |
| process_I_multivariant | Man page Source code |
| process_I_vector | Source code |
| process_config | Source code |
| process_config_si_from_data | Source code |
| process_si_data | Source code |
| process_si_sample | Source code |
| sample_posterior_R | Man page Source code |
| vcapply | Source code |
| viapply | Source code |
| vlapply | Source code |
| vnapply | Source code |
| wallinga_teunis | Man page Source code |
