Files in annecori/EpiEstim
Estimate Time Varying Reproduction Numbers from Epidemic Curves

.Rbuildignore
.github/.gitignore
.github/pull_request_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
EpiEstim.Rproj
NAMESPACE
NEWS.md R/check_cdt_samples_convergence.R R/coarse2estim.R R/compatibility.R R/data.R R/discr_si.R R/estimate_R_plots.R R/estimate_r.R R/init_mcmc_params.R R/make_config.R R/make_mcmc_control.R R/overall_infectivity.R R/plot.R R/sample_posterior_R.R R/utilities.R R/wallinga_teunis.R README.md
codecov.yml
data/Flu1918.rda
data/Flu2009.rda
data/Measles1861.rda
data/MockRotavirus.rda
data/SARS2003.rda
data/Smallpox1972.rda
data/flu_2009_NYC_school.rda
data/mers_2014_15.rda
fitRotavirus.R man/DiscrSI.Rd man/EstimateR.Rd man/Flu1918.Rd man/Flu2009.Rd man/Measles1861.Rd man/MockRotavirus.Rd man/OverallInfectivity.Rd man/SARS2003.Rd man/Smallpox1972.Rd man/WT.Rd man/check_cdt_samples_convergence.Rd man/coarse2estim.Rd man/discr_si.Rd man/estimate_R.Rd man/estimate_R_plots.Rd man/flu_2009_NYC_school.Rd man/init_mcmc_params.Rd man/make_config.Rd man/make_mcmc_control.Rd man/mers_2014_15.Rd man/overall_infectivity.Rd man/plot.estimate_R.Rd man/sample_posterior_R.Rd man/wallinga_teunis.Rd
tests/expected_output/Example1.rda
tests/expected_output/Example2.rda
tests/expected_output/Example3.rda
tests/expected_output/Example4.rda
tests/figs/deps.txt
tests/figs/flu2009-incidence-import.svg
tests/figs/flu2009-instantaneous-no-legend.svg
tests/figs/flu2009-rc.svg
tests/figs/flu2009-ri.svg
tests/figs/flu2009-si.svg
tests/testthat.R tests/testthat/test-estimate_R.R tests/testthat/test-plot.R tests/testthat/test-stample_posterior_R.R
vignettes/.gitignore
vignettes/figs/Delays_in_reporting.png
vignettes/figs/Illustration_of_process.png
vignettes/figs/Infector_infected_exact.png
vignettes/figs/Infector_infected_intervals.png
vignettes/figs/Renewal_equation.png
vignettes/figs/Serial_interval_with_uncertainty.png
vignettes/figs/Time_varying_reporting.png
vignettes/figs/Weekly_sliding_windows.png
vignettes/figs/interval_censored_example.png
vignettes/full_EpiEstim_vignette.Rmd vignettes/short_demo.Rmd
annecori/EpiEstim documentation built on May 4, 2021, 9:41 a.m.