Man pages for annecori/EpiEstim
EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves

check_cdt_samples_convergenceChecking convergence of an MCMC chain by using the...
coarse2estimLink coarseDataTools and EpiEstim
discr_siDiscretized Generation Time Distribution Assuming A Shifted...
DiscrSIFunction to ensure compatibility with EpiEstim versions <2.0
EpiEstim-packageThe EpiEstim package
estimate_rEstimated Instantaneous Reproduction Number
EstimateRFunction to ensure compatibility with EpiEstim versions <2.0
Flu1918Data on the 1918 H1N1 influenza pandemic in Baltimore.
Flu2009Data on the 2009 H1N1 influenza pandemic in a school in...
flu_2009_NYC_schoolData on the 2009 H1N1 influenza pandemic in a school in New...
init_MCMC_paramsinit_mcmc_params Finds clever starting points for the MCMC to...
Measles1861Data on the 1861 measles epidemic in Hagelloch, Germany.
MockRotavirusMock data on a rotavirus epidemic.
overall_infectivityOverall Infectivity Due To Previously Infected Individuals
OverallInfectivityFunction to ensure compatibility with EpiEstim versions <2.0
plotsPlotting the outputs of functions estimating the reproduction...
SARS2003Data on the 2003 SARS epidemic in Hong Kong.
Smallpox1972Data on the 1972 smallpox epidemic in Kosovo
wallinga_teunisEstimation of the case reproduction number using the Wallinga...
WTFunction to ensure compatibility with EpiEstim versions <2.0
annecori/EpiEstim documentation built on May 11, 2018, 1:07 a.m.