WT: Function to ensure compatibility with EpiEstim versions <2.0

In annecori/EpiEstim: Estimate Time Varying Reproduction Numbers from Epidemic Curves

Function to ensure compatibility with EpiEstim versions <2.0

Description

Please only use for compatibility; Prefer the new wallinga_teunis function instead

Usage

WT(
  I,
  T.Start,
  T.End,
  method = c("NonParametricSI", "ParametricSI"),
  Mean.SI = NULL,
  Std.SI = NULL,
  SI.Distr = NULL,
  nSim = 10,
  plot = FALSE,
  leg.pos = "topright"
)

Arguments

I	see incid in wallinga_teunis
T.Start	see config$t_start in wallinga_teunis
T.End	see config$t_end in wallinga_teunis
method	see method in wallinga_teunis (but WT uses CamelCase where wallinga_teunis uses snake_case for the method names)
Mean.SI	see config$mean_si in wallinga_teunis
Std.SI	see config$std_si in wallinga_teunis
SI.Distr	see config$si_distr in wallinga_teunis
nSim	see config$n_sim in wallinga_teunis
plot	Not used anymore, only there for compatibility
leg.pos	Not used anymore, only there for compatibility

annecori/EpiEstim documentation built on Sept. 7, 2024, 7:34 p.m.