EstimateR: Function to ensure compatibility with EpiEstim versions <2.0

In annecori/EpiEstim: Estimate Time Varying Reproduction Numbers from Epidemic Curves

Function to ensure compatibility with EpiEstim versions <2.0

Description

Please only use for compatibility; Prefer the new estimate_R function instead

Usage

EstimateR(
  I,
  T.Start,
  T.End,
  method = c("NonParametricSI", "ParametricSI", "UncertainSI"),
  n1 = NULL,
  n2 = NULL,
  Mean.SI = NULL,
  Std.SI = NULL,
  Std.Mean.SI = NULL,
  Min.Mean.SI = NULL,
  Max.Mean.SI = NULL,
  Std.Std.SI = NULL,
  Min.Std.SI = NULL,
  Max.Std.SI = NULL,
  SI.Distr = NULL,
  Mean.Prior = 5,
  Std.Prior = 5,
  CV.Posterior = 0.3,
  plot = FALSE,
  leg.pos = "topright"
)

Arguments

I	see incid in estimate_R
T.Start	see config$t_start in estimate_R
T.End	see config$t_end in estimate_R
method	see method in estimate_R (but EstimateR uses CamelCase where estimate_R uses snake_case for the method names)
n1	see n1 in estimate_R
n2	see n2 in estimate_R
Mean.SI	see config$mean_si in estimate_R
Std.SI	see config$std_si in estimate_R
Std.Mean.SI	see config$std_mean_si in estimate_R
Min.Mean.SI	see config$min_mean_si in estimate_R
Max.Mean.SI	see config$max_mean_si in estimate_R
Std.Std.SI	see config$std_std_si in estimate_R
Min.Std.SI	see config$min_std_si in estimate_R
Max.Std.SI	see config$max_std_si in estimate_R
SI.Distr	see config$si_distr in estimate_R
Mean.Prior	see config$mean_prior in estimate_R
Std.Prior	see config$std_prior in estimate_R
CV.Posterior	see config$cv_posterior in estimate_R
plot	Not used anymore, only there for compatibility
leg.pos	Not used anymore, only there for compatibility

annecori/EpiEstim documentation built on Sept. 7, 2024, 7:34 p.m.