API for anthony-aylward/exploreatacseq
Exploratory Analysis of ATAC-seq data
| Global functions | |
|---|---|
| SCATEData_accession_sample | Man page |
| SCATEData_sample | Man page |
| consensus_peaks | Man page Source code |
| coordinates_by_treatment | Man page Source code |
| count_dgelist | Man page Source code |
| explore | Man page Source code |
| exploreatacseq_color_palette | Man page Source code |
| extract_batch_vector | Man page Source code |
| extract_group_vector | Man page Source code |
| extract_peaks_paths_by_sample | Man page Source code |
| extract_reads_file_paths | Man page Source code |
| extract_sample_vector | Man page Source code |
| extract_treatment_vector | Man page Source code |
| extract_tss_enrichments | Man page Source code |
| filter_peaks | Man page Source code |
| generate_pca_plots | Man page Source code |
| get_raw_counts | Man page Source code |
| locate_SCATEData_files | Man page Source code |
| map_paths_to_samples | Man page Source code |
| median_peak_length | Man page Source code |
| most_variable_peaks | Man page Source code |
| parse_input_data | Man page Source code |
| parse_json | Man page Source code |
| peaks_by_sample | Man page Source code |
| plot_pca | Man page Source code |
| preprocess | Man page Source code |
| read_peaks | Man page Source code |
| transform_counts | Man page Source code |
| unify_granges | Man page Source code |
| unify_peaks | Man page Source code |
