Man pages for arcolombo/imcExperiment
Mass Cytometry S4 Class Structure Pipeline for Images
| cellIntensity | finds the intensities getter. |
| data | data |
| dot-checkSpatialDimension | the rows are the panel names, the columns are the single... |
| dot-imcExperimentToPPP | map to point pattern from imcExperiment class. |
| getCoordinates | finds the spatial coords, getter. |
| getCoordinates-set | Sets the coordinate positions of each cell (matrix), columns... |
| getDistance-set | re-assigns the distance matrix (rows are cells) |
| getMorphology-set | re-assigns morphological features can be stored (matrix) rows... |
| getNeighborhood | finds the neighborhood information. |
| getNetwork-set | re-assigns the network assignment (matrix) |
| imcdata | imcdata |
| imcExperiment | Initializes a imcExperiment and performs some rudimentary... |
| imcExperiment-class | a summarized experiment of IMC runs, dimensions of the... |
| imcExperimentToHyperFrame | map to point pattern from imcExperiment class. |
| percentilenormalize | given a matrix of intensity counts, perform min/max norm. |
| selectCases | subsets the imcExperiment to a case along with all slots for... |
| subsetCase | subsets the imcExperiment to a case along with all slots for... |
