subsetCase: subsets the imcExperiment to a case along with all slots for...
In arcolombo/imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images
Description
Usage
Arguments
Value
Examples
Description
subsets the imcExperiment to a case along with all slots for a single ROI, using for distance analysis
method to subset the slots, requires colData with column "ROIID"
Usage
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subsetCase(object, value, ...)
## S4 method for signature 'imcExperiment'
subsetCase(object, value)
Arguments
object
IMC container
value
this is ROIID a single character ID
...
additional parameters
Value
returns IMC object of a single case
roi imcExperiment
Examples
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data(imcdata)
myCase<-subsetCase(imcdata,"30-BM16-202_7Pre_s1_p1_r4_a4_ac")
myCase
data(imcdata)
myCase<-subsetCase(imcdata,"30-BM16-202_7Pre_s1_p1_r4_a4_ac")
myCase
arcolombo/imcExperiment documentation built on Aug. 21, 2021, 2:59 a.m.
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Description Usage Arguments Value Examples
Description
subsets the imcExperiment to a case along with all slots for a single ROI, using for distance analysis
method to subset the slots, requires colData with column "ROIID"
Usage
1 2 3 4 | subsetCase(object, value, ...)
## S4 method for signature 'imcExperiment'
subsetCase(object, value)
|
Arguments
object |
IMC container |
value |
this is ROIID a single character ID |
... |
additional parameters |
Value
returns IMC object of a single case
roi imcExperiment
Examples
1 2 3 4 5 6 | data(imcdata)
myCase<-subsetCase(imcdata,"30-BM16-202_7Pre_s1_p1_r4_a4_ac")
myCase
data(imcdata)
myCase<-subsetCase(imcdata,"30-BM16-202_7Pre_s1_p1_r4_a4_ac")
myCase
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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