getNeighborhood: finds the neighborhood information.

Description Usage Arguments Value Examples

Description

finds the neighborhood information.

slow assignment for the histoCAT neighborhood data (matrix) columns are the neighbors

Usage

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getNeighborhood(object, ...)

## S4 method for signature 'imcExperiment'
getNeighborhood(object)

getNeighborhood(object) <- value

## S4 replacement method for signature 'imcExperiment,matrix'
getNeighborhood(object) <- value

Arguments

object

is IMC container

...

additional arguments

value

matrix rows cells, columns are neighborhood histoCAT output

Value

imcExperiment container

imcExperiment container data(imcdata) getNeighborhood(imcdata)

imcExperiment container

imcExperiment container

Examples

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arcolombo/imcExperiment documentation built on Aug. 21, 2021, 2:59 a.m.