cellIntensity: finds the intensities getter.

In arcolombo/imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Description

finds the intensities getter.

sets cell Intensity slot to a new matrix. rows protein, columns are cells.

Usage

cellIntensity(object, ...)

## S4 method for signature 'imcExperiment'
cellIntensity(object)

cellIntensity(object) <- value

## S4 replacement method for signature 'imcExperiment,matrix'
cellIntensity(object) <- value

Arguments

object	IMC container
...	additional arguments
value	matrix rows protein, columns are cells

Value

imcExperiment container

imcExperiment container

imcExperiment container

imcExperiment container

Examples

data(imcdata)
dim(cellIntensity(imcdata))
data(imcdata);dim(cellIntensity(imcdata))
head(t(cellIntensity(imcdata)))
data(imcdata)
x<-asinh(counts(imcdata))
cellIntensity(imcdata)<-x

arcolombo/imcExperiment documentation built on Aug. 21, 2021, 2:59 a.m.