imcExperiment-class: a summarized experiment of IMC runs

In arcolombo/imcExperiment: Containerizes IMC data and pipes to CyTOF libraries.

Description

returns the expression of IMC data

returns the expression of IMC data

returns the phenotypic data associated with a imcExperiment object

Usage

## S4 method for signature 'imcExperiment'
cellIntensity(object)

## S4 replacement method for signature 'imcExperiment,matrix'
cellIntensity(object) <- value

## S4 method for signature 'imcExperiment'
pData(object)

getSpatial(object)

## S4 method for signature 'imcExperiment'
getSpatial(object)

## S4 replacement method for signature 'imcExperiment,matrix'
getSpatial(object) <- value

getNetwork(object)

## S4 method for signature 'imcExperiment'
getNetwork(object)

## S4 replacement method for signature 'imcExperiment,matrix'
getNetwork(object) <- value

getLabel(object)

## S4 method for signature 'imcExperiment'
getLabel(object)

subsetCase(object, value)

## S4 method for signature 'imcExperiment'
subsetCase(object, value)

Arguments

object	imcExperiment
object	imcExperiment
object	imcExperiment
object	imcExperiment

Slots

spatial

Spatial coordinate data. x,y coordinates.

Slots

spatial:

data.frame class containing x,y coordinates

arcolombo/imcExperiment documentation built on March 11, 2020, 4:14 a.m.