selectCases: subsets the imcExperiment to a case along with all slots for...

In arcolombo/imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Description

subsets the imcExperiment to a case along with all slots for a selected multiple ROIs.

method to subset the slots, requires colData with column "ROIID"

Usage

selectCases(object, value, ...)

## S4 method for signature 'imcExperiment'
selectCases(object, value)

Arguments

object	IMC container
value	this is ROIID vector
...	additional parameters

Value

imcExperiment container of selected cases

imcExperiment container of selected cases

Examples

data(imcdata)
myCases<-selectCases(imcdata,c("30-BM16-202_7Pre_s1_p1_r4_a4_ac","B17_350_14post_s1_p1_r5_a5_ac"))
myCases
table(colData(myCases)$ROIID)
data(imcdata)
myCases<-selectCases(imcdata,c("30-BM16-202_7Pre_s1_p1_r4_a4_ac","B17_350_14post_s1_p1_r5_a5_ac"))
myCases
table(colData(myCases)$ROIID)

arcolombo/imcExperiment documentation built on Aug. 21, 2021, 2:59 a.m.