imcExperiment: Initializes a imcExperiment and performs some rudimentary...
In arcolombo/imcExperiment: Containerizes IMC data and pipes to CyTOF libraries.
View source: R/imcExperiment.R
Description
FIXME: add Harold's quasi-normalized TPM method for tx-level comparisons.
Usage
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imcExperiment(
spatial = matrix(1, 3, 3),
cellIntensity = matrix(1, 3, 3),
neighborHood = matrix(1, 3, 3),
network = matrix(1, 3, 3),
uniqueLabel = rep("A", 3),
ROIID = data.frame(ROIID = rep("A", 3)),
...
)
Arguments
spatial
coordinate data
exprs_intensity
matrix of counts
covariates
the column metadata (covariates) for each sample
arcolombo/imcExperiment documentation built on Jan. 20, 2021, noon
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View source: R/imcExperiment.R
Description
FIXME: add Harold's quasi-normalized TPM method for tx-level comparisons.
Usage
1 2 3 4 5 6 7 8 9 | imcExperiment(
spatial = matrix(1, 3, 3),
cellIntensity = matrix(1, 3, 3),
neighborHood = matrix(1, 3, 3),
network = matrix(1, 3, 3),
uniqueLabel = rep("A", 3),
ROIID = data.frame(ROIID = rep("A", 3)),
...
)
|
Arguments
spatial |
coordinate data |
exprs_intensity |
matrix of counts |
covariates |
the column metadata (covariates) for each sample |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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