View source: R/imcExperiment.R

FIXME: add Harold's quasi-normalized TPM method for tx-level comparisons.

1 2 3 4 5 6 7 8 9 | ```
imcExperiment(
spatial = matrix(1, 3, 3),
cellIntensity = matrix(1, 3, 3),
neighborHood = matrix(1, 3, 3),
network = matrix(1, 3, 3),
uniqueLabel = rep("A", 3),
ROIID = data.frame(ROIID = rep("A", 3)),
...
)
``` |

`spatial` |
coordinate data |

`exprs_intensity` |
matrix of counts |

`covariates` |
the column metadata (covariates) for each sample |

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