View source: R/imcExperiment.R
FIXME: add Harold's quasi-normalized TPM method for tx-level comparisons.
1 2 3 4 5 6 7 8 9 | imcExperiment(
spatial = matrix(1, 3, 3),
cellIntensity = matrix(1, 3, 3),
neighborHood = matrix(1, 3, 3),
network = matrix(1, 3, 3),
uniqueLabel = rep("A", 3),
ROIID = data.frame(ROIID = rep("A", 3)),
...
)
|
spatial |
coordinate data |
exprs_intensity |
matrix of counts |
covariates |
the column metadata (covariates) for each sample |
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