imcExperiment: Initializes a imcExperiment and performs some rudimentary...

Description Usage Arguments

View source: R/imcExperiment.R

Description

FIXME: add Harold's quasi-normalized TPM method for tx-level comparisons.

Usage

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imcExperiment(
  spatial = matrix(1, 3, 3),
  cellIntensity = matrix(1, 3, 3),
  neighborHood = matrix(1, 3, 3),
  network = matrix(1, 3, 3),
  uniqueLabel = rep("A", 3),
  ROIID = data.frame(ROIID = rep("A", 3)),
  ...
)

Arguments

spatial

coordinate data

exprs_intensity

matrix of counts

covariates

the column metadata (covariates) for each sample


arcolombo/imcExperiment documentation built on Jan. 20, 2021, noon