add_auto_classification: Define polygons for manual population gating.

In armbrustlab/popcycle: Popcycle: An R package providing reproducible analytical methods to uniformly process and curate SeaFlow data

Define polygons for manual population gating.

Description

Define polygons for manual population gating.

Usage

add_auto_classification(
  popname,
  para_x,
  para_y,
  position,
  gates,
  scale,
  min_pe = NA,
  gates.log = NULL
)

Arguments

popname	Population name.
position	position parameter to FlowDensity
gates	gates parameter to FlowDensity
scale	scale parameter to FlowDensity
min_pe	Only consider particles with pe > min.pe
gates.log	Per population named list of classification parameters. If a definition for popname already exists it will be updated. If it doesn't exist it will be appended to the end to the list. If NULL, a new list will be created.
para.x	Channel to use as x axis.
para.y	Channel to use as y axis.

Value

gates.log with a new FlowDensity func call parameter set for popname

armbrustlab/popcycle documentation built on April 1, 2024, 2:41 p.m.