API for armbrustlab/popcycle
Popcycle: An R package providing reproducible analytical methods to uniformly process and curate SeaFlow data
| Global functions | |
|---|---|
| add_abundance | Man page Source code |
| add_auto_classification | Man page Source code |
| add_coord_labels | Man page |
| add_filter_ids | Source code |
| add_filter_params | Source code |
| add_gating_ids | Source code |
| add_hours | Source code |
| add_instrument_serial | Source code |
| add_manual_classification | Man page Source code |
| add_opp_paths | Source code |
| add_vct_paths | Source code |
| auto_classify | Man page Source code |
| classify_3min_opp | Source code |
| classify_opp | Man page Source code |
| classify_opp_files | Man page Source code |
| classify_window_opp | Source code |
| clean_file_path | Man page Source code |
| cmap_convert | Man page Source code |
| concatenate.evt | Man page Source code |
| concatenate.opp | Man page Source code |
| copy_column_parts | Source code |
| copy_outlier_table | Man page Source code |
| copy_tables | Man page Source code |
| create_PSD | Man page Source code |
| create_PSD_one_file | Man page Source code |
| create_breaks | Man page Source code |
| create_filter_params | Man page Source code |
| create_full_filter_plan | Source code |
| create_full_gating_plan | Source code |
| create_grid | Man page Source code |
| create_meta | Man page Source code |
| create_realtime_bio | Man page Source code |
| create_realtime_meta | Man page Source code |
| create_volume_table | Man page Source code |
| csv_convert | Man page Source code |
| delete_filter_params_by_id | Man page Source code |
| delete_gating_params_by_id | Man page Source code |
| delete_poly_by_id | Man page Source code |
| delete_poly_by_id_pop | Man page Source code |
| empty_evt | Man page Source code |
| empty_opp | Man page Source code |
| filter_3min_evt | Source code |
| filter_evt | Man page Source code |
| filter_evt_files | Man page Source code |
| filter_window_evt | Source code |
| find_common_dbs | Man page Source code |
| flowrate | Man page Source code |
| from_filename_date_str | Man page Source code |
| get_clean_stat_table | Man page Source code |
| get_cruise | Man page Source code |
| get_evt_by_file | Man page Source code |
| get_evt_files | Man page Source code |
| get_filter_params_by_id | Man page Source code |
| get_filter_plan_table | Man page Source code |
| get_filter_table | Man page Source code |
| get_gating_params_by_id | Man page Source code |
| get_gating_plan_table | Man page Source code |
| get_gating_table | Man page Source code |
| get_inst | Man page Source code |
| get_metadata_table | Man page Source code |
| get_opp_by_date | Man page Source code |
| get_opp_by_file | Man page Source code |
| get_opp_table | Man page Source code |
| get_outlier_table | Man page Source code |
| get_poly_log_by_gating_id_pop | Man page Source code |
| get_poly_table | Man page Source code |
| get_processed_particles | Man page Source code |
| get_raw_stat_table | Man page Source code |
| get_sfl_table | Man page Source code |
| get_stat_table | Man page Source code |
| get_vct_by_date | Man page Source code |
| get_vct_by_file | Man page Source code |
| get_vct_quantile_range | Man page |
| get_vct_range | Man page Source code |
| get_vct_range_one_file | Man page Source code |
| get_vct_table | Man page Source code |
| grid_labels | Man page |
| group_psd_by_time | Man page Source code |
| identify_noise | Man page Source code |
| identify_saturated | Man page Source code |
| inflection_point | Man page Source code |
| is_transformed | Man page Source code |
| make_popcycle_db | Man page Source code |
| manual_classify | Man page Source code |
| migrate_tables | Man page Source code |
| mktempname | Man page Source code |
| plan_from_table | Man page Source code |
| plot_cruisetrack | Man page Source code |
| plot_cyt | Man page Source code |
| plot_cytogram | Man page Source code |
| plot_filter_cytogram | Man page Source code |
| plot_histogram | Man page Source code |
| plot_map | Man page Source code |
| plot_time | Man page Source code |
| plot_vct_cytogram | Man page Source code |
| prep_vct_stats | Source code |
| readSeaflow | Man page Source code |
| read_calib_csv | Man page Source code |
| read_mie_csv | Man page Source code |
| read_par_csv | Man page Source code |
| read_parquet_one_quantile | Man page Source code |
| read_reference_filter_params | Man page Source code |
| read_refraction_csv | Man page Source code |
| read_sfl_tsv | Man page Source code |
| remove_boundary_points | Man page Source code |
| reset_filter_plan_table | Man page Source code |
| reset_filter_table | Man page Source code |
| reset_gating_plan_table | Man page Source code |
| reset_gating_table | Man page Source code |
| reset_metadata_table | Man page Source code |
| reset_opp_table | Man page Source code |
| reset_outlier_table | Man page Source code |
| reset_poly_table | Man page Source code |
| reset_sfl_table | Man page Source code |
| reset_table | Man page Source code |
| reset_vct_table | Man page Source code |
| save_filter_params | Man page Source code |
| save_filter_plan | Man page Source code |
| save_gating_params | Man page Source code |
| save_gating_plan | Man page Source code |
| save_metadata | Man page Source code |
| save_opp_stats | Man page Source code |
| save_outliers | Man page Source code |
| save_poly | Man page Source code |
| save_sfl | Man page Source code |
| save_vct_stats | Man page Source code |
| set_gating_params | Man page Source code |
| size_carbon_conversion | Man page Source code |
| sql_dbExecute | Man page Source code |
| sql_dbGetQuery | Man page Source code |
| sql_dbWriteTable | Man page Source code |
| stat_calibration | Man page Source code |
| to_date_str | Man page Source code |
| to_filename_date_str | Man page Source code |
| transformData | Man page Source code |
| untransformData | Man page Source code |
| update_plan_table | Man page Source code |
| validate_psd | Man page |
| writeSeaflow | Man page Source code |
| write_realtime_bio_tsdata | Man page Source code |
| write_realtime_meta_tsdata | Man page Source code |
