get_processed_particles: Get a tibble of OPP or VCT particles

In armbrustlab/popcycle: Popcycle: An R package providing reproducible analytical methods to uniformly process and curate SeaFlow data

Get a tibble of OPP or VCT particles

Description

Get a tibble of OPP or VCT particles

Usage

get_processed_particles(
  db,
  data_dir,
  data_type,
  file_ids = NULL,
  start_date = NULL,
  end_date = NULL,
  outliers = TRUE,
  col_select = NULL
)

Arguments

db	SQLite3 database file path.
data_dir	Directory with OPP or VCT parquet files.
data_type	"opp" or "vct".
file_ids	Vector of file IDs with julian day directory.
start_date	Start date, inclusive.
end_date	End date, inclusive.
outliers	If TRUE, remove outliers. Otherwise don't perform outlier filtering.
col_select	col_select parameter passed to arrow::read_parquet as a charactr vector. date and file_id are always added to to this vector. By default all columns are returned.

Value

Tibble of OPP or VCT particles. If no data is found a tibble with zero rows will be returned.

armbrustlab/popcycle documentation built on April 1, 2024, 2:41 p.m.