classify_opp_files: Classify particles for a list of OPP files.

In armbrustlab/popcycle: Popcycle: An R package providing reproducible analytical methods to uniformly process and curate SeaFlow data

Classify particles for a list of OPP files.

Description

Classify a list of OPP files. Save per file aggregate population statistics to SQLite3 database and save particle population definitions to text files in vct_dir.

Usage

classify_opp_files(
  db,
  opp_dir,
  opp_files,
  vct_dir,
  gating_id = NULL,
  mie_table = NULL,
  cores = 1
)

Arguments

db	SQLite3 database file path.
opp_dir	OPP file directory.
opp_files	List of OPP files to classify. Include julian day directory. If NULL then all OPP files (regardless of outlier status) will attempt to be classified.
vct_dir	VCT file output directory.
gating_id	Single gating ID to use for all files in opp_files.
mie_table	Optionally provide the Mie theory table. If NULL, the installed Mie Theory lookup table will be used. This table should be identical to one produced by read_mie_csv().
cores	Number of cores to use for gating

Value

None

armbrustlab/popcycle documentation built on April 1, 2024, 2:41 p.m.