Files in atakanekiz/Seurat3.0
Tools for Single Cell Genomics
.Rbuildignore
.gitattributes
.github/pull_request_template.md
.github/stale.yml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/clustering.R
R/data.R
R/differential_expression.R
R/dimensional_reduction.R
R/generics.R
R/integration.R
R/objects.R
R/plotting.old
R/preprocessing.R
R/tree.R
R/unknown.old
R/utilities.R
R/visualization.R
R/zfRenderSeurat.old
README.md
appveyor.yml
cran-comments.md
data/cc.genes.rda
data/pbmc_small.rda
inst/CITATION
inst/extdata/pbmc_raw.txt
man/ALRAChooseKPlot.Rd
man/AddMetaData.Rd
man/AddModuleScore.Rd
man/AnchorSet-class.Rd
man/Assay-class.Rd
man/AugmentPlot.Rd
man/AverageExpression.Rd
man/BarcodeInflectionsPlot.Rd
man/BuildClusterTree.Rd
man/CalculateBarcodeInflections.Rd
man/CaseMatch.Rd
man/CellCycleScoring.Rd
man/CellScatter.Rd
man/Cells.Rd
man/CollapseSpeciesExpressionMatrix.Rd
man/CombinePlots.Rd
man/Command.Rd
man/Convert.Rd
man/CreateAssayObject.Rd
man/CreateDimReducObject.Rd
man/CreateSeuratObject.Rd
man/CustomDistance.Rd
man/CustomPalette.Rd
man/DefaultAssay.Rd
man/DietSeurat.Rd
man/DimHeatmap.Rd
man/DimPlot.Rd
man/DimReduc-class.Rd
man/DoHeatmap.Rd
man/DotPlot.Rd
man/ElbowPlot.Rd
man/Embeddings.Rd
man/ExpMean.Rd
man/ExpSD.Rd
man/ExpVar.Rd
man/ExportToCellbrowser.Rd
man/FeatureLocator.Rd
man/FeaturePlot.Rd
man/FeatureScatter.Rd
man/FetchData.Rd
man/FindAllMarkers.Rd
man/FindClusters.Rd
man/FindConservedMarkers.Rd
man/FindIntegrationAnchors.Rd
man/FindMarkers.Rd
man/FindNeighbors.Rd
man/FindTransferAnchors.Rd
man/FindVariableFeatures.Rd
man/GetAssay.Rd
man/GetAssayData.Rd
man/GetIntegrationData.Rd
man/Graph-class.Rd
man/HTODemux.Rd
man/HTOHeatmap.Rd
man/HVFInfo.Rd
man/HoverLocator.Rd
man/Idents.Rd
man/IntegrateData.Rd
man/IntegrationData-class.Rd
man/JS.Rd
man/JackStraw.Rd
man/JackStrawData-class.Rd
man/JackStrawPlot.Rd
man/Key.Rd
man/L2CCA.Rd
man/L2Dim.Rd
man/LabelClusters.Rd
man/LabelPoints.Rd
man/Loadings.Rd
man/LocalStruct.Rd
man/LogNormalize.Rd
man/LogVMR.Rd
man/MetaFeature.Rd
man/MinMax.Rd
man/Misc.Rd
man/MixingMetric.Rd
man/NormalizeData.Rd
man/OldWhichCells.Rd
man/PCASigGenes.Rd
man/PolyDimPlot.Rd
man/PolyFeaturePlot.Rd
man/ProjectDim.Rd
man/Read10X.Rd
man/Read10X_h5.Rd
man/ReadAlevin.Rd
man/ReadAlevinCsv.Rd
man/RegressRegNB.Rd
man/RelativeCounts.Rd
man/RenameCells.Rd
man/RidgePlot.Rd
man/RunALRA.Rd
man/RunCCA.Rd
man/RunICA.Rd
man/RunPCA.Rd
man/RunTSNE.Rd
man/RunUMAP.Rd
man/SampleUMI.Rd
man/ScaleData.Rd
man/ScoreJackStraw.Rd
man/SelectIntegrationFeatures.Rd
man/SetAssayData.Rd
man/SetIntegrationData.Rd
man/Seurat-class.Rd
man/SeuratCommand-class.Rd
man/SeuratTheme.Rd
man/SplitObject.Rd
man/Stdev.Rd
man/StopCellbrowser.Rd
man/SubsetByBarcodeInflections.Rd
man/SubsetData.Rd
man/Tool.Rd
man/TopCells.Rd
man/TopFeatures.Rd
man/TransferData.Rd
man/UpdateSeuratObject.Rd
man/VariableFeaturePlot.Rd
man/VariableFeatures.Rd
man/VizDimLoadings.Rd
man/VlnPlot.Rd
man/WhichCells.Rd
man/as.sparse.Rd
man/cc.genes.Rd
man/merge.Seurat.Rd
man/oldseurat-class.Rd
man/pbmc_small.Rd
man/print.DimReduc.Rd
man/subset.Seurat.Rd
src/Makevars
src/ModularityOptimizer.cpp
src/ModularityOptimizer.h
src/RModularityOptimizer.cpp
src/RcppExports.cpp
src/Seurat.dll
src/Seurat3.0.dll
src/data_manipulation.cpp
src/data_manipulation.h
src/integration.cpp
src/integration.h
src/snn.cpp
src/snn.h
tests/testdata/barcodes.tsv
tests/testdata/cr3.0/barcodes.tsv.gz
tests/testdata/cr3.0/features.tsv.gz
tests/testdata/cr3.0/matrix.mtx.gz
tests/testdata/genes.tsv
tests/testdata/matrix.mtx
tests/testdata/nbt_small.Rdata
tests/testthat.R
tests/testthat/test_alignment.old
tests/testthat/test_cluster_determination.old
tests/testthat/test_data_manipulation.R
tests/testthat/test_differential_expression.old
tests/testthat/test_interaction.old
tests/testthat/test_load_10X.R
tests/testthat/test_modularity_optimizer.R
tests/testthat/test_objects.R
tests/testthat/test_preprocessing.R
tests/testthat/test_seurat_object.old
tests/testthat/test_snn.old
tests/testthat/test_utilities_internal.old
travis_setup.sh
