annot2models: Prepare GTF for gene model plotting.
In bartongroup/RATS: Relative Abundance of Transcripts
annot2models R Documentation
Prepare GTF for gene model plotting.
Description
Create GRanges objects for each transcript and bind them into a GRangeList for each gene.
Then one can easily ggbio::autoplot() a gene's models by its gene ID.
Usage
annot2models(annotfile, threads = 1L)
Arguments
annotfile
A GTF file.
threads
Number of processing threads (Default 1).
Value
A list (by gene) of GRangeLists (by transcript).
bartongroup/RATS documentation built on June 8, 2022, 12:40 a.m.
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| annot2models | R Documentation |
Prepare GTF for gene model plotting.
Description
Create GRanges objects for each transcript and bind them into a GRangeList for each gene.
Then one can easily ggbio::autoplot() a gene's models by its gene ID.
Usage
annot2models(annotfile, threads = 1L)
Arguments
annotfile |
A GTF file. |
threads |
Number of processing threads (Default 1). |
Value
A list (by gene) of GRangeLists (by transcript).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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