do_boot: Perform the bootstraps.
In bartongroup/RATS: Relative Abundance of Transcripts

do_boot

R Documentation

Perform the bootstraps.

Description

Abstracts the bootstrap process from the specific field names of each bootstrap type and removes the associated code duplication.

Usage

do_boot(
  lean,
  tx_filter,
  eltr,
  elge,
  boot_data_A = NULL,
  boot_data_B = NULL,
  count_data_A = NULL,
  count_data_B = NULL,
  niter = NULL,
  threads = 1,
  verbose = TRUE,
  test_transc = TRUE,
  test_genes = TRUE,
  ...
)

Arguments

`lean`	Minimal insight reported.
`tx_filter`	The annotation.
`eltr`	Selection vector for eligible transcripts.
`elge`	Selection vector for eligible genes.
`boot_data_A`	Bootstrapped quantifications for first condition.
`boot_data_B`	Bootstrapped quantifications for second condition.
`count_data_A`	Plain quantifications for first condition.
`count_data_B`	Plain quantifications for second condition.
`niter`	Number of iterations (for quantification bootstraps only).
`threads`	Number of threads.
`verbose`	Progress messages.
`test_transc`	Do transcript-level test.
`test_genes`	Do gene-level test.
`...`	Other arguments to pass on to calculate_DTU().