Files in bartongroup/RATS
Relative Abundance of Transcripts
.Rbuildignore
.gitattributes
.gitignore
CONTRIBUTING.md
DESCRIPTION
LICENSE
Meta/vignette.rds
NAMESPACE
R/data_simulators.R
R/func.R
R/input.R
R/rats.R
R/results.R
README.md
doc/input.R
doc/input.Rmd
doc/input.html
doc/output.R
doc/output.Rmd
doc/output.html
doc/plots.R
doc/plots.Rmd
doc/plots.html
inst/CITATION
inst/doc/input.R
inst/doc/input.Rmd
inst/doc/input.html
inst/doc/output.R
inst/doc/output.Rmd
inst/doc/output.html
inst/doc/plots.R
inst/doc/plots.Rmd
inst/doc/plots.html
man/alloc_out.Rd
man/annot2ids.Rd
man/annot2models.Rd
man/annotation_inconsistent.Rd
man/calculate_DTU.Rd
man/call_DTU.Rd
man/denest_sleuth_boots.Rd
man/do_boot.Rd
man/dtu_plurality_summary.Rd
man/dtu_summary.Rd
man/dtu_switch_summary.Rd
man/fish4rodents.Rd
man/g.test.1.Rd
man/g.test.2.Rd
man/get_dtu_ids.Rd
man/get_plurality_ids.Rd
man/get_switch_ids.Rd
man/granges2ids.Rd
man/group_samples.Rd
man/gtf2ids.Rd
man/infer_bootnum.Rd
man/maxabs.Rd
man/parameters_are_good.Rd
man/plot_diagnostics.Rd
man/plot_gene.Rd
man/plot_overview.Rd
man/plot_shiny_volcano.Rd
man/scale_data.Rd
man/sim_boot_data.Rd
man/sim_count_data.Rd
man/structure_data.Rd
man/tidy_annot.Rd
tests/test-all.R
tests/testthat/test.gtf
tests/testthat/test_1_internal-structures.R
tests/testthat/test_2_data-munging.R
tests/testthat/test_3_input-checks.R
tests/testthat/test_4_steps.R
tests/testthat/test_5_output.R
tests/testthat/test_6_reports.R
tests/testthat/test_7_extras.R
vignettes/figs/dge-dte-dtu.jpg
vignettes/figs/dprop.jpg
vignettes/figs/fcVSdprop.jpg
vignettes/figs/fcvolcano.jpg
vignettes/figs/gvolcano.jpg
vignettes/figs/maxdprop.jpg
vignettes/figs/rats_logo.png
vignettes/figs/rats_workflow.jpg
vignettes/figs/reprod.jpg
vignettes/figs/reprodVSdprop.jpg
vignettes/figs/tvolcano.jpg
vignettes/input.R
vignettes/input.Rmd
vignettes/input.html
vignettes/input.md
vignettes/output.R
vignettes/output.Rmd
vignettes/output.html
vignettes/output.md
vignettes/plots.R
vignettes/plots.Rmd
vignettes/plots.html
vignettes/plots.md
vignettes/plots_files/figure-html/unnamed-chunk-3-1.png
vignettes/plots_files/figure-html/unnamed-chunk-4-1.png
vignettes/plots_files/figure-html/unnamed-chunk-9-1.png
